Zenodo chat

Participants

  • @Jennifer A Clark

  • @Brent Westbrook (Unlicensed)

  • @Lily Wang

Goals

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Discussion topics

Notes

Notes

  • BW: can immediately get Zenodo DOI with empty upload

  • Process

    • Create an empty Zenodo record

    • Create the dataset with the DOI

    • Upload the dataset

    • Redownload the results and upload to Zenodo

  • Can also modify the description later on MolSSI

    • Create the dataset and upload

    • Redownload, modify description, and upload onto Zenodo

    • (still runs into chicken and egg problem?)

  • YDS automated upload

    • BW: doesn’t obtain DOI until publication

    • BW: You may need to serialize the records from MolSSI

    • LW: The MolSSI side won’t provide all properties, e.g., wave function, unless requested

    • LW: Spice lives online as hdf5 file that does contain everything

    • Jen will ask Ben about using hdf5

    • BW: can prereserve_doi: bool in the Zenodo API

  • QCA-DS FF Releases:

    • LW: table at the top of the README / before all the others sounds good

    • Discussion of FF Release table:

      • Could do one table with a row for each force field,

        • one with the FF name (and link to fitting repo, e.g. )

        • Opt dataset

        • TD dataset

        • Elements

        • Zenodo

          • Upload all training data into 1 record, tidier. Makes CI harder

          • Discussion – could we do multiple directories in a PR?

          • JCl: can try to do Sage 2.1 in 1 PR

      • (Discussion about openforcefield.org landing pages – the 2.0.0 page is more of a news post, other FFs not guaranteed to have one)

Action items

Decisions

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