2022-08-30 QC Meeting notes

 Date

Aug 30, 2022

 Participants

  • @Pavan Behara

  • @Chapin Cavender

  • @David Dotson

  • @BenPritchard

  • @Jeffrey Wagner

 Discussion topics

Item

Notes

Item

Notes

Updates from MolSSI

  • BP: Ran server backup over the weekend. Cleaned up the code and some major re-org to remove nested structures.
    NIH funded postdoc started this week.

Throughput status

  • No calculations over the last four days, may be some server issue?

    • BP: I do see lilac and PRP pushing back results

    • DD: Me too. Need to dig into errorcyling. I’m already running the errorcycling on Vulcan here since it is choking.

    • PB: It’s also possible these are erroring out after resubmissions.

    • DD: Yeah, take a look at them and archive them if so. OTOH, JW should we use aws for errorcyling when GHA is running out of memory?

    • JW: I would advice against that, it’s not the money issue but effort wise it is not worth the time now since we can do errorcycling locally.

    • DD: Agreed.

  • OpenFF Protein Capped 3-mer Backbones v1.0

    • Opts: 251942 → 258812 → 262844 (4032)

    • TDs: 4 → 4 → 5

  • RNA Single Point Dataset v1.0

    • default: 8864 → 8868 (100 error)

    • wb97m-d3bj/def2-tzvppd: stuck at 3468 this week, submitted fat node jobs on UCI cluster to get this out by this week, they’re in queue because of a scheduled maintenance.

  • SPICE sets with openff-default spec

    • SPICE DES370K Single Points Dataset v1.0: 186218 → 679406 (remaining - 11875 errors, 83 incomplete)

    • SPICE DES Monomers - 0 → 37150 (remaining - 250 errors)

    • SPICE Ion Pair - 0 → 2153 (remaining - 703 errors)

    • In queue:

      • SPICE Solvated Amino acids

      • SPICE Dipeptides

      • SPICE Pubchem set {1..6}

    • Moved pubchem sets to scientific review column, errorcycling is choking with out of memory errors, will push them to compute one by one.

 Action items

 Decisions