(1) 2020-08-27 valence parameter test re-fitting for fixing amide issue
1. new t70 child parameter candidate
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cf. Barrier height study (mainly for my own understanding) to understand (1) why we need child terms t70a
and t70b
.
- Conclusion: Based on the following plots, it seems reasonable to have separate child term [*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#1]
(higher energy barrier) and [*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#7X3]
( lower energy barrier).
- No clear evidence for the necessity to combine a pattern with carbon attached to the carbonyl carbon ([*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#6]
) and one with hydrogen attached to the carbonyl carbon([*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#1]
)
2. Test fitting
(1) re-fitting #1.1
Separated endo-cyclic and exo-cyclic rotations(
t69a
andt69b
,t70
andt70a
): will determine whether to separate or not after comparing the final k values.w/ only selected td targets
w/ old conda env.(openforcefield==0.6.0, forcebalance=1.7.1)
optimized in 6 steps (3.21033e+01 → 7.97182e+00)
| SMIRKS | initial guess | fit #1.1 |
---|---|---|---|
t69a | [*:1]-[#7X3:2]-[#6X3$(*=[#8,#16,#7]):3]~[*:4] | 2.5 (1+cos(2x-180)) + 0.0 (1+cosx) | 2.130536422094e+00 (1+cos(2x-180)) + 9.910621243621e-02 (1+cosx) |
t69b | [*:1]-[#7X3:2]-!@[#6X3$(*=[#8,#16,#7]):3]~[*:4] | 2.5 (1+cos(2x-180)) + 0.0 (1+cosx) | 2.270075197860e+00 (1+cos(2x-180)) + 3.898905433309e-01 (1+cosx) |
t70 | [#1:1]-[#7X3:2]-[#6X3:3]=[#8,#16,#7:4] | 3.459249459574e+00 (1+cos(2x-180)) + 1.356955617521e+00 (1+cosx) | 3.471614493904e+00 (1+cos(2x-180)) + 1.353665035664e+00 (1+cosx) |
t70a | [#1:1]-[#7X3:2]-!@[#6X3:3]=[#8,#16,#7:4] | 2.5 (1+cos(2x-180)) + 2.0 (1+cosx) | 2.5 (1+cos(2x-180)) + 2.0 (1+cosx) |
t70b | [*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#6,#1] | 2.5 (1+cos(2x-180)) + 0.0 (1+cosx) | 2.779138641990e+00 (1+cos(2x-180)) + 3.381053683048e-02 (1+cosx) |
t70c | [#1:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#6,#1] | 2.5 (1+cos(2x-180)) + 2.0 (1+cosx) | 2.590468938026e+00 (1+cos(2x-180)) + 1.820091344671e+00 (1+cosx) |
t70d | [*:1]-[#7X3:2]-!@[#6X3:3](=[#8,#16,#7:4])-[#7X3] | 2.5 (1+cos(2x-180)) + 0.0 (1+cosx) | 1.888086753838e+0 (1+cos(2x-180)) - 2.028808021603e-01 (1+cosx) |
QM vs MM torsion profiles