Transition Metal Forcefield Phase 1

Driver

@Jennifer A Clark

Approver

@Lily Wang

Contributors

 

Other stakeholders

Genetech, Chodera Lab

Objective

Provide Chodera lab and Genetech group with QM data necessary for training a machine learned forcefield.

Time frame

12/01/2024 - 12/01/2025

Key outcomes

A dataset that covers:

  • Relevant levels of theory

  • Support for metal centers of interest

  • Coverage of ligand chemical space

  • QM output with properties of interest

Key metrics

  • ?

Status

In progress

GitHub repo

Slack channel

https://openforcefieldgroup.slack.com/archives/C085GQ8BCNB

Designated meeting

TM FF Meeting

Released datasets

Publication

 

 Problem Statement and Objective

 

 Scope

Must have:

  • Dataset at agreed upon model chemistry (suggest BP86 / def2-TZVP for primary and B3LYP-d3bj)

  • Support for metal centers of primary interest: Pd, Fe, Zn, Mg, Cu, Li
    with organic compound elements: C, H, P, S, O, N, F, Cl, Br

  • Coverage of ligand chemical space

  • Coverage of charged molecules {+1, 0, −1}e

  • QM output with properties such as: energies, forces, partial charges, multipole moments

Must have:

  • Dataset at agreed upon model chemistry (suggest BP86 / def2-TZVP for primary and B3LYP-d3bj)

  • Support for metal centers of primary interest: Pd, Fe, Zn, Mg, Cu, Li
    with organic compound elements: C, H, P, S, O, N, F, Cl, Br

  • Coverage of ligand chemical space

  • Coverage of charged molecules {+1, 0, −1}e

  • QM output with properties such as: energies, forces, partial charges, multipole moments

Nice to have:

  • Dataset with model chemistry overlapping with SPICE (i.e., ωB97M-D3BJ/def2-TZVPPD) and OpenFF (i.e., B3LYP-D3BJ/DZVP) standards.

  • Support for metal centers of secondary interest: Rh, Ir, Pt, Ni, Cr, Ag
    Better: Make it element agnostic

  • Coverage of charged molecules {+3, +2, +1, 0, −1, −2, −3}e etc.

  • Desiderata: High-spin Fe complexes (e.g. up to 5/2)

  • Desiderd: higher charge states

  • QM output with properties such as: atomic spin density, orbital energies, electronic structure of complexes

Not in scope:

  • Organometallic complexes with multiple metal centers

Project Approaches

References