Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Version History

Version 1 Current »

Participants

Goals

Discussion topics

Item

Presenter

Notes

NRP Issues

  • JAC: Ben has captured the error and isolated it to a connection error when credentials are refreshed. He has added a patch that will simply try again (and succeed) in the case of a remote connection error. It is available on GitHub and will be in a release of QCFractal very soon.


Dataset Updates


JAC Update

  • PR421 Lexie’s small molecule dataset finished except for 5 with Iodine which isn’t supported for MBIS charges

  • Running PR422 Lexie’s larger MW dataset, two didn’t finish before, I thought because of the connectivity errors.

  • Lipd MAPS running with low number of pods to see if any complete. So far no restarts but no completions either.

  • There is still a Lipid Opts Benchmark, submit? or wait for QCF update? Are all new datasets my responsibility?

Kubernetes Python API

JAC: I’ve written some nice scripts in notebooks for Kubernetes API. If I have many deployments I’d like to take some time to clean it up into a package to monitor them more easily. How can I work this into Zenhub?

DS3-CSD Update:

From CSD there are: 230550 structures
xyz2mol_tm successfully converts: 217776
There are 51754 that match constraints for our primary dataset

  • 2031 are radicals

  • 3779 failed to form OpenFF molecules

  • 45156 failed to make inchi-keys

Leaving 788 structures left

Action items

  •  

Decisions

  • No labels

0 Comments

You are not logged in. Any changes you make will be marked as anonymous. You may want to Log In if you already have an account.