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Presenter

Notes

Alexandra McIsaac

View file
nameconformer_filters.pptx

CB on conformer filtering slide: Wondering if taking QM single points is the right thing to do here

BS: How do the fits change as you change the energy filters? Or do your filters change as the FF changes?

  • Filtering is done prior to fitting

BS: DDE can be confusing if the geometry changes significantly

DM: What about the all-by-all DDE energy comparison

CBy: 2 points:

  • Redundant molecules my be dominating the fit, not allowing bad molecules from being fixed

  • Adding a 1 kcal/A^2 might be helpful

BS: We found it helpful to only compare energies when the optimized RMSD was less than 0.4 A

BS: Looking at a smaller set would be good to try as CBy suggested


Pavan

DM: Curious how many times the molecules are exercised for each param

BS: Would be interesting to look at dipole to asses the elec. contribution

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